SMTL ID : 8xkd.1

beta-1,4-galacosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 14 residues within 4Å: Chain A: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.69, C.70, S.73, E.93, D.94, L.215 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.13 Hydrogen bonds: A:I.11, A:I.13, A:F.40, A:F.40, A:S.73, A:D.94 Water bridges: A:R.19 Salt bridges: A:R.19 UDP.2: 14 residues within 4Å: Chain B: I.11, S.12, I.13, R.19, A.39, F.40, T.41, P.42, G.66, G.69, C.70, S.73, E.93, D.94 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.13 Hydrogen bonds: B:I.11, B:I.13, B:F.40, B:F.40, B:S.73, B:D.94, B:D.95 Water bridges: B:R.19, B:D.95 Salt bridges: B:R.19

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain B: H.49, R.52, Y.53, M.76 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.53

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 4 residues within 4Å: Chain B: V.212, Q.213, E.214, L.215 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, G. et al., Crystal structure and structure-guided tunnel engineering in a bacterial beta-1,4-galactosyltransferase. Int.J.Biol.Macromol. (2024)

Release Date

2024-12-11

Peptides

Glycosyltransferase family 25 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase family 25 protein

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