SMTL ID : 8xl4.1

Structure of human propionyl-CoA carboxylase in complex with acetyl-CoA (PCC-ACO)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

5 x BTN: BIOTIN(Covalent)

BTN.1: 9 residues within 4Å: Chain A: M.693, K.694 Chain B: C.365, P.395, G.396, F.397, P.399 Chain D: S.233, V.234 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: B:F.397, B:F.397 Hydrophobic interactions: D:V.234, A:K.694 BTN.3: 9 residues within 4Å: Chain B: S.233, V.234 Chain C: M.693, K.694 Chain D: C.365, P.395, G.396, F.397, P.399 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: C:K.694, B:V.234 Hydrogen bonds: D:F.397, D:F.397 BTN.5: 10 residues within 4Å: Chain E: M.693, K.694 Chain F: C.365, P.395, G.396, F.397, P.399 Chain H: S.233, V.234 Ligands: ACO.7 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: H:V.234, E:K.694 Hydrogen bonds: F:F.397, F:F.397 BTN.8: 9 residues within 4Å: Chain I: M.693, K.694 Chain J: C.365, P.395, G.396, F.397, P.399 Chain L: S.233, V.234 4 PLIP interactions: 1 interactions with chain L, 2 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: L:V.234, I:K.694 Hydrogen bonds: J:F.397, J:F.397 BTN.10: 9 residues within 4Å: Chain J: S.233, V.234 Chain K: M.693, K.694 Chain L: C.365, P.395, G.396, F.397, P.399 4 PLIP interactions: 1 interactions with chain K, 2 interactions with chain L, 1 interactions with chain J Hydrophobic interactions: K:K.694, J:V.234 Hydrogen bonds: L:F.397, L:F.397

6 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.2: 15 residues within 4Å: Chain B: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, I.166, P.199, A.201, G.202, G.203 Chain D: V.462, M.463 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:A.201 Hydrogen bonds: B:G.162, B:A.164, B:A.164, B:G.203, D:G.437 Salt bridges: B:R.54 ACO.4: 15 residues within 4Å: Chain B: V.462, M.463 Chain D: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, I.166, P.199, A.201, G.202, G.203 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:A.201 Hydrogen bonds: D:G.162, D:A.164, D:G.203, B:G.437 Salt bridges: D:R.54 ACO.6: 15 residues within 4Å: Chain F: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, P.199, A.201, G.202, G.203 Chain H: G.437, V.462, M.463 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain H Hydrophobic interactions: F:A.201 Hydrogen bonds: F:G.162, F:A.164, F:A.164, F:G.203, H:G.437 Salt bridges: F:R.54 ACO.7: 16 residues within 4Å: Chain F: G.437, V.462, M.463 Chain H: R.54, F.126, F.129, G.130, S.132, G.162, A.164, Q.167, P.199, A.201, G.202, I.225 Ligands: BTN.5 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain F Hydrophobic interactions: H:A.201 Salt bridges: H:R.54 Hydrogen bonds: F:G.437 ACO.9: 18 residues within 4Å: Chain J: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, I.166, Q.167, P.199, A.201, G.202, G.203 Chain L: G.436, G.437, V.462, M.463 7 PLIP interactions: 6 interactions with chain J, 1 interactions with chain L Hydrophobic interactions: J:A.201 Hydrogen bonds: J:G.162, J:A.164, J:A.164, J:G.203, L:G.437 Salt bridges: J:R.54 ACO.11: 15 residues within 4Å: Chain J: V.462, M.463 Chain L: R.54, F.126, F.129, G.130, S.132, G.162, G.163, A.164, I.166, P.199, A.201, G.202, G.203 6 PLIP interactions: 6 interactions with chain L Hydrophobic interactions: L:A.201 Hydrogen bonds: L:G.162, L:A.164, L:A.164, L:G.203 Salt bridges: L:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, F. et al., Structural insights into human propionyl-CoA carboxylase (PCC) and 3-methylcrotonyl-CoA carboxylase (MCC). Elife (2024)

Release Date

2024-10-30

Peptides

Propionyl-CoA carboxylase alpha chain, mitochondrial: ACEGIK
Propionyl-CoA carboxylase beta chain, mitochondrial: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Propionyl-CoA carboxylase alpha chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

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