SMTL ID : 8xld.1

Structure of the GFP:GFP-nanobody complex from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: I.16, N.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17 Water bridges: A:P.48 EDO.3: 5 residues within 4Å: Chain B: Y.59, K.64, G.65, F.67, T.68 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.65 EDO.4: 3 residues within 4Å: Chain B: V.92, Q.111, G.112 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: D.85, H.87, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.85, A:D.85, A:H.87, A:H.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of the GFP:GFP-nanobody complex from Biortus. To Be Published

Release Date

2024-03-06

Peptides

staygold: A
Nanobody(Staygold-S2G10)-Nanobody(Staygold-S4F1): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

staygold

Nanobody(Staygold-S2G10)-Nanobody(Staygold-S4F1)