SMTL ID : 8xli.1

Structure of the Vo sector of V-ATPase in the adult cortex and hippocampus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-9-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain C: S.6, N.8, E.156 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.156 NAG-NAG.2: 3 residues within 4Å: Chain C: F.48, N.50, S.52 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain C: N.20, D.31 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain C: Y.25, K.26, F.64, S.96, N.97, W.139 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structure of the Vo sector of V-ATPase in the adult cortex and hippocampus. To Be Published

Release Date

2025-07-02

Peptides

V-type proton ATPase 116 kDa subunit a 1: A
ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a: B
V-type proton ATPase subunit S1: C
V-type proton ATPase subunit: D
V-type proton ATPase subunit e 2: E
Ribonuclease K: F
V-type proton ATPase 16 kDa proteolipid subunit c: GHIJKLMNO
Renin receptor cytoplasmic fragment: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
b

C
c

D
d

E
e

F
f

G
g

H
h

I
i

J
j

K
k

L
l

M
m

N
n

O
o

P
p

Membrane

We predict this structure to be a membrane protein.
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V-type proton ATPase 116 kDa subunit a 1

ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a

V-type proton ATPase subunit S1

V-type proton ATPase subunit

V-type proton ATPase subunit e 2

Ribonuclease K

V-type proton ATPase 16 kDa proteolipid subunit c

Renin receptor cytoplasmic fragment