SMTL ID : 8xlp.1

Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x FE2: FE (II) ION(Non-covalent)
194 x CLA: CHLOROPHYLL A(Covalent)(Non-covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
24 x WVN: 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene(Non-covalent)
4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
20 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
4 x MN: MANGANESE (II) ION(Non-covalent)
22 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
24 x KC2: Chlorophyll c2(Covalent)(Non-covalent)
48 x II0: (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol(Non-covalent)
8 x IHT: (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Si, L. et al., Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina. To Be Published
Release Date
2024-07-31
Peptides
Photosystem II protein D1: AR
Photosystem II CP47 reaction center protein: BS
Photosystem II CP43 reaction center protein: CT
Photosystem II D2 protein: DU
Cytochrome b559 subunit alpha: EV
Cytochrome b559 subunit beta: FW
Photosystem II reaction center protein H: GX
Photosystem II reaction center protein I: HY
Photosystem II reaction center protein K: IZ
Photosystem II reaction center protein L: J0
Photosystem II protein M: K1
Photosystem II reaction center protein T: L2
Photosystem II protein W: M3
Photosystem II reaction center X protein: N4
Photosystem II reaction center protein Psb30: O5
Photosystem II reaction center protein Z: P6
NCP: Qc
CAC2: 7e
CAC3: 8f
CAC4: 9g
CAC5: ah
CAC6: bi
CAC1: dj
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
a
R
A
B
b
S
B
C
c
T
C
D
d
U
D
E
e
V
E
F
f
W
F
G
h
X
H
H
i
Y
I
I
k
Z
K
J
l
0
L
K
m
1
M
L
t
2
T
M
w
3
W
N
x
4
X
O
y
5
Y
P
z
6
Z
Q
g
c
G
7
2
e
O
8
3
f
P
9
4
g
Q
a
5
h
R
b
6
i
S
d
1
j
N
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1

Toggle Identical (AR)

Photosystem II CP47 reaction center protein

Toggle Identical (BS)

Photosystem II CP43 reaction center protein

Toggle Identical (CT)

Photosystem II D2 protein

Toggle Identical (DU)

Cytochrome b559 subunit alpha

Toggle Identical (EV)

Cytochrome b559 subunit beta

Toggle Identical (FW)

Photosystem II reaction center protein H

Toggle Identical (GX)

Photosystem II reaction center protein I

Toggle Identical (HY)

Photosystem II reaction center protein K

Toggle Identical (IZ)

Photosystem II reaction center protein L

Toggle Identical (J0)

Photosystem II protein M

Toggle Identical (K1)

Photosystem II reaction center protein T

Toggle Identical (L2)

Photosystem II protein W

Toggle Identical (M3)

Photosystem II reaction center X protein

Toggle Identical (N4)

Photosystem II reaction center protein Psb30

Toggle Identical (O5)

Photosystem II reaction center protein Z

Toggle Identical (P6)

NCP

Toggle Identical (Qc)

CAC2

Toggle Identical (7e)

CAC3

Toggle Identical (8f)

CAC4

Toggle Identical (9g)

CAC5

Toggle Identical (ah)

CAC6

Toggle Identical (bi)

CAC1

Toggle Identical (dj)

Related Entries With Identical Sequence

8wb4.1 | 8xr6.1