SMTL ID : 8xm7.1

Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain C: K.23, T.24, T.42, D.64, T.65, G.67 Ligands: GTP.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.42, C:T.65

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.2: 22 residues within 4Å: Chain C: D.18, G.19, A.20, V.21, G.22, K.23, T.24, C.25, F.35, Y.39, I.40, T.42, D.64, T.65, A.66, G.67, K.123, D.125, S.165, A.166, L.167 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:D.18, C:A.20, C:V.21, C:K.23, C:T.24, C:T.24, C:C.25, C:Y.39, C:T.42, C:T.42, C:G.67, C:K.123, C:A.166, C:L.167 Salt bridges: C:K.23, C:K.23, C:D.125 pi-Stacking: C:F.35, C:F.35 pi-Cation interactions: C:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kukimoto-Niino, M. et al., RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state. J.Biol.Chem. (2024)

Release Date

2024-06-26

Peptides

Engulfment and cell motility protein 1: A
Dedicator of cytokinesis protein 5: B
Rho-related GTP-binding protein RhoG: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Engulfment and cell motility protein 1

Dedicator of cytokinesis protein 5

Rho-related GTP-binding protein RhoG

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