SMTL ID : 8xn6.1

The Crystal Structure of GSK3b from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: I.63, G.66, F.68, G.69, V.71, A.84, K.86, V.111, L.133, D.134, Y.135, V.136, T.139, D.182, K.184, Q.186, N.187, L.189, D.201 Chain B: D.265 Ligands: MG.2 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:D.265, A:K.86, A:D.134, A:V.136, A:D.182, A:K.184 Salt bridges: A:K.86 ANP.14: 23 residues within 4Å: Chain A: D.265 Chain B: I.63, G.64, N.65, G.66, G.69, V.71, A.84, K.86, V.111, L.133, D.134, Y.135, V.136, T.139, D.182, K.184, Q.186, N.187, L.189, D.201 Ligands: MG.15, EDO.16 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.69, B:K.86, B:D.134, B:V.136, B:K.184, A:D.265 Water bridges: B:Q.186, B:D.201, B:D.201 Salt bridges: B:K.86

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.187, D.201 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.201 MG.15: 4 residues within 4Å: Chain B: K.184, N.187, D.201 Ligands: ANP.14 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.201

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: R.112, R.114, Y.115 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: Y.57, T.60, K.87, N.130 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: Q.100, I.101, K.104, Q.207 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: G.203, S.204 Chain B: K.293 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: R.320, T.327, A.328, R.329, T.331, E.334 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: V.143, Y.147, L.154, Y.158, Y.162, P.192 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: L.99, Q.100, R.103 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: D.106, H.107, C.108 Ligand excluded by PLIP EDO.11: 1 residues within 4Å: Chain A: E.343 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: T.357, P.358, L.360, F.361 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: R.221, Y.222, Y.223 Chain B: R.221, D.261 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: Y.135, V.136, P.137, T.139, R.142 Ligands: ANP.14 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain B: Y.147, Y.158, Y.162, P.192 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain B: S.148, E.250, G.254, Q.255 Ligand excluded by PLIP EDO.19: 9 residues within 4Å: Chain A: S.216, Y.217, R.224, L.228, I.229 Chain B: S.216, R.224, L.228, I.229 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: L.82, R.114, D.134, Y.135 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain B: M.27, Y.57, Y.72, K.87, N.130 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: D.234, T.236, E.284 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.23: 8 residues within 4Å: Chain A: K.293, F.294 Chain B: R.97, R.181, K.206, N.214, V.215, Y.217 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.97, B:R.181, B:R.181, B:K.206, B:N.214, B:V.215, B:Y.217 PEG.24: 5 residues within 4Å: Chain B: E.343, D.346, N.348, V.349, K.350 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.343, B:D.346, B:K.350 PEG.25: 5 residues within 4Å: Chain B: R.320, T.327, R.329, T.331, E.334 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.320, B:R.329 Water bridges: B:E.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of GSK3b from Biortus. To Be Published

Release Date

2024-01-24

Peptides

Glycogen synthase kinase-3 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycogen synthase kinase-3 beta