SMTL ID : 8xn8.1

The Crystal Structure of SRC from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: L.191, G.194, V.199, A.211, K.213, T.256, E.257, Y.258, M.259, S.263, R.306, A.308, N.309, L.311, D.322 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.256, A:E.257, A:M.259, A:S.263, A:D.266, A:D.266, A:N.309 Water bridges: A:C.195, A:C.195, A:C.195, A:K.213, A:K.213, A:S.263, A:S.263, A:R.306, A:R.306, A:R.306 Salt bridges: A:K.213, A:R.306

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.213, N.309, D.322 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.322, H2O.2, H2O.7

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Y.8, Q.62, E.64, E.65, Y.67, F.68, T.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.8, A:Y.8, A:Q.62 Water bridges: A:T.165

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: Y.258, M.259, N.260, G.313, E.314 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.258, A:N.260, A:E.314 Water bridges: A:S.166, A:E.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of SRC from Biortus. To Be Published

Release Date

2024-01-24

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene tyrosine-protein kinase Src