SMTL ID : 8xo5.1

Crystal structure of measles virus fusion inhibitor MEK28 complexed with F protein HR1 (HR1-40) (H3 space group)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

hetero-3-3-mer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain B: E.17, L.20, K.21, E.24 Chain C: N.15, E.19 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:E.17, B:L.20, B:E.24, C:N.15, C:E.19 Water bridges: B:E.24, B:E.24 MPD.2: 6 residues within 4Å: Chain D: E.17, L.20, K.21, E.24 Chain E: N.15, E.19 7 PLIP interactions: 2 interactions with chain E, 5 interactions with chain D Hydrophobic interactions: E:N.15, E:E.19, D:E.17, D:L.20, D:E.24 Water bridges: D:E.24, D:E.24 MPD.3: 6 residues within 4Å: Chain A: N.15, E.19 Chain F: E.17, L.20, K.21, E.24 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:E.17, F:L.20, F:E.24, A:N.15, A:E.19 Water bridges: F:E.24, F:E.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takahara, A. et al., Elucidation of Postfusion Structures of the Measles Virus F Protein for the Structure-Based Design of Fusion Inhibitors. J.Med.Chem. (2025)

Release Date

2025-01-01

Peptides

Fusion glycoprotein F1: ACE
Measles virus fusion inhibitor MEK28: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Fusion glycoprotein F1

Measles virus fusion inhibitor MEK28