SMTL ID : 8xok.1

Cryo-EM structure of human ABCC4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

14 x DU0: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol(Non-covalent)(Covalent)(Non-functional Binders)

DU0.1: 5 residues within 4Å: Chain A: F.112, T.133, A.136, Y.137, V.140 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.112, A:T.133, A:A.136, A:V.140 DU0.2: 4 residues within 4Å: Chain A: T.226, A.227, M.231, L.238 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.226, A:A.227 DU0.3: 4 residues within 4Å: Chain A: P.862, W.863, A.865, I.866 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.862, A:W.863, A:A.865 DU0.4: 4 residues within 4Å: Chain A: W.863, I.962, G.966, L.970 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.863, A:W.863, A:W.863, A:I.962, A:L.970 DU0.5: 7 residues within 4Å: Chain A: L.730, W.734, Y.737, W.763, I.767, L.771 Ligands: DU0.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.734, A:W.763, A:I.767, A:L.771 DU0.6: 7 residues within 4Å: Chain A: L.730, W.733, N.740, K.741 Ligands: DU0.5, DU0.7, DU0.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.730, A:W.733 Hydrogen bonds: A:N.740 DU0.7: 11 residues within 4Å: Chain A: V.726, V.729, L.730, W.733, S.855, V.856, A.859, Q.978 Ligands: DU0.6, DU0.8, DU0.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.726, A:V.729, A:L.730, A:V.856, A:Q.978 Hydrogen bonds: A:S.855 DU0.8: 5 residues within 4Å: Chain A: V.851, S.855, A.859 Ligands: DU0.7, DU0.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.851, A:A.859 DU0.9: 3 residues within 4Å: Ligands: DU0.6, DU0.7, DU0.8 No protein-ligand interaction detected (PLIP) DU0.10: 5 residues within 4Å: Chain A: V.243, V.334, T.338, L.341 Ligands: DU0.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.243, A:L.341 Hydrogen bonds: A:L.342 DU0.11: 5 residues within 4Å: Chain A: I.235, A.239, A.242, L.342 Ligands: DU0.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.235, A:A.239, A:A.242 DU0.12: 5 residues within 4Å: Chain A: L.215, P.219, I.373, V.376, S.377 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.215, A:P.219, A:I.373, A:I.373, A:V.376 DU0.13: 5 residues within 4Å: Chain A: N.762, W.763, G.766, G.770, V.773 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.763 DU0.14: 4 residues within 4Å: Chain A: K.32, Y.881, R.951, A.954 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.881, A:Y.881

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.15: 8 residues within 4Å: Chain A: L.847, F.875, I.876, R.879, R.880, F.993, C.996, S.1000 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.875, A:F.875, A:I.876, A:F.993 Salt bridges: A:R.880

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., The ATP-bound inward-open conformation of ABCC4 reveals asymmetric ATP binding for substrate transport. Febs Lett. (2024)

Release Date

2024-07-24

Peptides

ATP-binding cassette sub-family C member 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family C member 4

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