SMTL ID : 8xoy.1

The Crystal Structure of PTP1B from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: S.216, A.218, G.221, R.222, Q.263 No protein-ligand interaction detected (PLIP)

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.25, R.255, G.260 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: R.46, P.90, C.122, A.123 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.113, V.114, H.176 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: K.117, G.118 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: L.38, P.39, K.40 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: M.2, A.279, K.280, M.283 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: E.98, D.138, T.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.138 Water bridges: A:T.139 EDO.11: 5 residues within 4Å: Chain A: K.117, P.181, D.182, F.183, G.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.117, A:K.117 EDO.12: 4 residues within 4Å: Chain A: E.5, E.9, L.273, I.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.5, A:E.5 EDO.13: 5 residues within 4Å: Chain A: S.147, E.148, D.149, V.156, Q.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.147

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: P.90, C.93, Q.124, M.134, F.136 3 PLIP interactions: 3 interactions with chain A Water bridges: A:C.93, A:G.94, A:G.94 GOL.9: 5 residues within 4Å: Chain A: Y.47, D.49, F.183, A.218, Q.263 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.49, A:Q.263 Water bridges: A:Y.47, A:D.182, A:D.182, A:A.218, A:A.218, A:Q.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of PTP1B from Biortus. To Be Published

Release Date

2024-01-24

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1