SMTL ID : 8xp4.1

Crystal Structure of human lysyl-tRNA synthetase with acetyllysine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x ALY: N(6)-ACETYLLYSINE(Non-covalent)

ALY.1: 14 residues within 4Å: Chain A: E.233, K.237, E.271, Y.273, L.404, A.405, N.429, A.430, Y.431, E.433, L.434, G.478, W.479, G.480 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.273, A:Y.431, A:Y.431 Hydrogen bonds: A:E.433, A:G.478, A:W.479, A:G.480 Water bridges: A:K.237 ALY.2: 14 residues within 4Å: Chain B: E.233, K.237, E.271, Y.273, L.404, A.405, N.429, A.430, Y.431, T.432, E.433, G.478, W.479, G.480 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:E.233, B:Y.273, B:A.405, B:Y.431, B:Y.431 Hydrogen bonds: B:N.429, B:E.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Crystal Structure of human lysyl-tRNA synthetase with acetyllysine. To Be Published

Release Date

2025-01-22

Peptides

Lysine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine--tRNA ligase

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