SMTL ID : 8xpv.1

The Crystal Structure of EphA2 from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x 4Z5: 1-(3,3-dimethylbutyl)-3-{2-fluoro-4-methyl-5-[7-methyl-2-(methylamino)pyrido[2,3-d]pyrimidin-6-yl]phenyl}urea(Non-covalent)

4Z5.1: 22 residues within 4Å: Chain A: V.32, A.49, I.50, K.51, E.68, M.72, F.75, I.80, I.81, I.95, T.97, E.98, Y.99, M.100, G.103, Y.140, L.151, V.160, S.161, D.162, F.163 Ligands: EDO.6 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.32, A:A.49, A:K.51, A:F.75, A:I.80, A:I.95, A:T.97, A:Y.140, A:L.151, A:V.160, A:F.163 Hydrogen bonds: A:E.68, A:E.68, A:M.100, A:M.100, A:D.162 Water bridges: A:K.51, A:D.162

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: A.136, N.137, K.268, F.269, A.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.269, A:A.270 Water bridges: A:S.201

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: D.271, S.274, I.275, K.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.271, A:K.278 EDO.4: 3 residues within 4Å: Chain A: N.102, F.108, K.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.102, A:K.112 EDO.5: 4 residues within 4Å: Chain A: H.78, N.153, N.155, V.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.153 Water bridges: A:N.155 EDO.6: 3 residues within 4Å: Chain A: I.24, F.163 Ligands: 4Z5.1 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain A: W.213, E.220, W.224, P.242, T.243, F.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.224, A:T.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of EphA2 from Biortus. To Be Published

Release Date

2024-01-24

Peptides

Ephrin type-A receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ephrin type-A receptor 2