SMTL ID : 8xpx.1 (1 other biounit)

The Crystal Structure of PARP12 from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.24, V.25, Q.73, Y.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.24, A:Q.73, A:Y.185 EDO.6: 4 residues within 4Å: Chain A: H.117, H.118, S.120, H.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.120

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: Q.45, N.46, L.47, W.50, Y.182 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.44

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: D.92, W.93, S.107, I.175, F.176, K.178 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.178 Hydrogen bonds: A:W.93, A:S.107, A:F.176 Water bridges: A:K.178 ACT.4: 9 residues within 4Å: Chain A: F.75, H.76, G.77, Y.108, A.110, Y.115, S.116, F.119 Ligands: ACT.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.108, A:A.110, A:Y.115 Hydrogen bonds: A:G.77 Salt bridges: A:H.76 ACT.5: 5 residues within 4Å: Chain A: G.100, Y.108, Y.115, F.119 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.108 Hydrogen bonds: A:G.100, A:Y.115 ACT.7: 7 residues within 4Å: Chain A: H.76, V.82, I.86, F.91, D.92, V.95, C.96 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.82, A:I.86, A:V.95 Hydrogen bonds: A:D.92 Water bridges: A:H.76, A:G.77 Salt bridges: A:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of PARP12 from Biortus. To Be Published

Release Date

2024-03-06

Peptides

Protein mono-ADP-ribosyltransferase PARP12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein mono-ADP-ribosyltransferase PARP12

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