SMTL ID : 8xq0.1

Crystal structure of spleen tyrosine kinase(SYK)in complex with SKI-G-1653

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x 01: cyclopropyl-[5-[[4-[4-[[(3~{S},4~{S})-3-methoxy-4-oxidanyl-pyrrolidin-1-yl]methyl]-3-methyl-pyrazol-1-yl]pyrimidin-2-yl]amino]-1-methyl-indol-3-yl]methanone

01.1: 19 residues within 4Å: Chain A: L.22, G.23, S.24, F.27, V.30, A.45, K.47, E.65, M.93, E.94, M.95, A.96, E.97, G.99, P.100, R.143, N.144, L.146, D.157 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.22, A:A.45, A:K.47, A:L.146 Hydrogen bonds: A:A.96, A:A.96 Salt bridges: A:D.157 01.2: 18 residues within 4Å: Chain B: L.22, G.23, V.30, A.45, K.47, E.65, V.78, M.93, E.94, M.95, A.96, E.97, G.99, P.100, R.143, N.144, L.146, D.157 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.22, B:A.45, B:K.47, B:P.100, B:L.146 Hydrogen bonds: B:A.96, B:A.96 Salt bridges: B:D.157 01.3: 19 residues within 4Å: Chain C: L.22, G.23, S.24, F.27, V.30, A.45, E.65, M.93, E.94, M.95, A.96, E.97, G.99, P.100, R.143, N.144, L.146, D.157 Chain D: N.280 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.22, C:A.45, C:P.100, C:L.146 Hydrogen bonds: C:A.96, C:A.96 Salt bridges: C:D.157 01.4: 17 residues within 4Å: Chain D: L.22, G.23, V.30, A.45, E.65, V.78, M.93, E.94, M.95, A.96, E.97, G.99, P.100, R.143, N.144, L.146, D.157 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:A.45, D:P.100, D:L.146 Hydrogen bonds: D:A.96, D:A.96 Salt bridges: D:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, B.I., Crystal structure of spleen tyrosine kinase(SYK) in complex with SKI-G-1673. To Be Published

Release Date

2025-01-15

Peptides

Tyrosine-protein kinase SYK: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tyrosine-protein kinase SYK

Related Entries With Identical Sequence