SMTL ID : 8xq2.1

Crystal structure of spleen tyrosine kinase(SYK)in complex with SKI-G-1693

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.63, A.66, N.67, Q.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.70

2 x 01: cyclopropyl-[1-(2-fluoranylethyl)-5-[[4-[4-[[(3~{R},4~{S})-3-methoxy-4-oxidanyl-pyrrolidin-1-yl]methyl]-3-methyl-pyrazol-1-yl]pyrimidin-2-yl]amino]indol-3-yl]methanone

01.2: 19 residues within 4Å: Chain A: L.22, G.23, F.27, V.30, A.45, K.47, E.65, M.93, E.94, M.95, A.96, E.97, G.99, P.100, K.103, R.143, N.144, L.146, D.157 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.22, A:F.27, A:A.45, A:K.47, A:L.146 Hydrogen bonds: A:A.96, A:A.96 Salt bridges: A:D.157 01.3: 20 residues within 4Å: Chain B: L.22, G.23, S.24, F.27, V.30, A.45, K.47, E.65, V.78, M.93, E.94, M.95, A.96, E.97, G.99, P.100, R.143, N.144, L.146, D.157 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.22, B:F.27, B:A.45, B:K.47, B:L.146 Hydrogen bonds: B:A.96, B:A.96 Salt bridges: B:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, B.I., Crystal structure of spleen tyrosine kinase(SYK) in complex with SKI-G-1673. To Be Published

Release Date

2025-01-15

Peptides

Tyrosine-protein kinase SYK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase SYK

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