SMTL ID : 8xqc.1

Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated PAF15 and hemimethylated DNA analog

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 13 residues within 4Å: Chain A: G.269, P.270, F.800, I.822, E.823, M.824, W.825, E.844, D.845, C.846, Y.895, K.899, L.902 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.823, A:M.824, A:D.845, A:D.845, A:C.846, A:K.899

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.1131, C.1133, A.1139, C.1140, H.1157 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1131, A:C.1133, A:C.1140, A:H.1157 ZN.3: 4 residues within 4Å: Chain A: H.448, C.475, C.548, C.551 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.448, A:C.475, A:C.548, A:C.551

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, G. et al., Activation of DNMT1 by Chemically Synthesized Dual monoubiquitinated PAF15 Protein. To Be Published

Release Date

2025-01-15

Peptides

DNA (cytosine-5)-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 1