SMTL ID : 8xqj.1

Cryo-EM structure of human dimeric APJR complex with antagonistic antibody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 6 residues within 4Å: Chain C: G.194, L.197, W.198, F.201, L.223 Ligands: CLR.3 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.197, C:L.223 CLR.2: 6 residues within 4Å: Chain C: T.246, F.247 Chain D: P.230, T.234, R.238, P.243 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:F.247, C:F.247, C:F.247, D:P.230, D:P.243, D:P.243 CLR.3: 6 residues within 4Å: Chain C: R.205 Chain D: W.198, F.201, R.202, L.223 Ligands: CLR.1 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.198, D:F.201, D:L.223 CLR.4: 8 residues within 4Å: Chain C: M.183, F.186, T.234, R.238, P.243, F.244 Chain D: T.246, F.247 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:F.186, C:T.234, C:P.243, C:P.243, C:F.244, D:F.247, D:F.247, D:F.247, D:F.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, Y. et al., Structural insights into the regulation of monomeric and dimeric apelin receptor. Nat Commun (2025)

Release Date

2025-01-22

Peptides

JN241: AB
Soluble cytochrome b562,Apelin receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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JN241

Soluble cytochrome b562,Apelin receptor

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