SMTL ID : 8xqv.1

Crystal structure of AtHPPD-YH23025 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.192, H.274, E.360 Ligands: 01.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.192, A:H.274, A:E.360 CO.3: 4 residues within 4Å: Chain B: H.192, H.274, E.360 Ligands: 01.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.192, B:H.274, B:E.360

2 x 01: 4-[[1,6-dimethyl-2,5-bis(oxidanylidene)-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3~{H}-1,4-benzodiazepin-4-yl]methyl]benzenecarbonitrile

01.2: 23 residues within 4Å: Chain A: H.192, L.231, S.233, P.246, N.248, Q.259, Q.273, H.274, M.301, L.334, F.347, T.348, K.349, P.350, F.358, E.360, F.385, G.386, K.387, N.389, F.390, L.393 Ligands: CO.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.246, A:F.347, A:F.347, A:F.358, A:F.358, A:F.385 Hydrogen bonds: A:N.248 01.4: 23 residues within 4Å: Chain B: H.192, V.194, L.231, S.233, P.246, N.248, Q.273, H.274, M.301, L.334, Q.345, F.347, T.348, K.349, P.350, F.358, E.360, F.385, K.387, N.389, F.390, L.393 Ligands: CO.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.231, B:P.246, B:F.347, B:F.347, B:F.358, B:F.358, B:F.358, B:F.385, B:K.387, B:F.390

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-YH23025 complex. To Be Published

Release Date

2025-01-15

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-hydroxyphenylpyruvate dioxygenase