SMTL ID : 8xrp.1

The Cryo-EM structure of IL-12, receptor subunit beta-1 and receptor subunit beta-2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain B: W.3, E.13, H.84, W.91, M.190, D.192, Y.199, N.201 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.91 Hydrogen bonds: B:E.13 NAG-NAG-BMA.2: 8 residues within 4Å: Chain F: W.3, E.13, H.84, W.91, M.190, D.192, Y.199, N.201 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:W.91 Hydrogen bonds: F:E.13 NAG-NAG-BMA.3: 8 residues within 4Å: Chain J: W.3, E.13, H.84, W.91, M.190, D.192, Y.199, N.201 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:W.91 Hydrogen bonds: J:E.13 NAG-NAG-BMA.4: 8 residues within 4Å: Chain N: W.3, E.13, H.84, W.91, M.190, D.192, Y.199, N.201 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:W.91 Hydrogen bonds: N:E.13

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain C: T.23, N.25, Q.65 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.25, C:Q.65 NAG.6: 1 residues within 4Å: Chain C: N.143 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.143 NAG.7: 2 residues within 4Å: Chain C: E.170, N.172 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain G: T.23, N.25, Q.65 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:N.25, G:Q.65 NAG.9: 2 residues within 4Å: Chain G: K.142, N.143 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:K.142 Hydrogen bonds: G:N.143 NAG.10: 2 residues within 4Å: Chain G: E.170, N.172 No protein-ligand interaction detected (PLIP) NAG.11: 3 residues within 4Å: Chain K: T.23, N.25, Q.65 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:N.25, K:Q.65 NAG.12: 1 residues within 4Å: Chain K: N.143 No protein-ligand interaction detected (PLIP) NAG.13: 2 residues within 4Å: Chain K: E.170, N.172 No protein-ligand interaction detected (PLIP) NAG.14: 3 residues within 4Å: Chain O: T.23, N.25, Q.65 2 PLIP interactions: 2 interactions with chain O Hydrogen bonds: O:N.25, O:Q.65 NAG.15: 1 residues within 4Å: Chain O: N.143 No protein-ligand interaction detected (PLIP) NAG.16: 2 residues within 4Å: Chain O: E.170, N.172 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Structure and assembly of the human IL-12 signaling complex. Structure (2024)

Release Date

2024-07-24

Peptides

Interleukin-12 subunit alpha: AEIM
Interleukin-12 subunit beta: BFJN
Interleukin-12 receptor subunit beta-2: CGKO
Interleukin-12 receptor subunit beta-1: DHLP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

I
I

M
M

B
B

F
F

J
J

N
N

C
C

G
G

K
K

O
O

D
D

H
H

L
L

P
P

Interleukin-12 subunit alpha

Interleukin-12 subunit beta

Interleukin-12 receptor subunit beta-2

Interleukin-12 receptor subunit beta-1

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