SMTL ID : 8xsl.1

SARS-CoV-2 spike + IMCAS-123

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: P.330, N.331, P.579, Q.580, T.581 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.717, L.922, Q.926, Q.1071 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.922

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.616 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.709, G.1131 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: N.801, S.803 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain A: N.1134 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain A: Y.28, N.61 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain B: P.330, N.331, Q.580, L.582 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain B: N.709, G.1131 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain B: N.717, Q.926, Q.1071 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain B: N.801, S.803 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain B: N.1098, T.1100, H.1101, F.1103 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain B: N.1134 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain C: N.616 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain C: N.709, G.1131 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain C: N.717, L.922, Q.926 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain C: N.1134 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Z. et al., Deciphering a reliable synergistic bispecific strategy of rescuing antibodies for SARS-CoV-2 escape variants, including BA.2.86, EG.5.1, and JN.1. Cell Rep (2024)

Release Date

2024-07-17

Peptides

Spike glycoprotein: ABC
IMCAS-123 heavy chain: DF
IMCAS-123 light chain: EG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

F
M

E
L

G
N

Spike glycoprotein

IMCAS-123 heavy chain

IMCAS-123 light chain

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