SMTL ID : 8xuq.1

Cryo-EM structure of tomato NRC2 tetramer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 7 residues within 4Å: Chain A: T.467, S.468, K.473, K.689, K.721, K.747, K.773 11 PLIP interactions: 11 interactions with chain A Salt bridges: A:K.473, A:K.473, A:K.473, A:K.689, A:K.689, A:K.721, A:K.721, A:K.721, A:K.747, A:K.747, A:K.747 IHP.3: 8 residues within 4Å: Chain B: T.467, D.469, K.473, K.689, N.719, K.721, K.747, K.775 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.468, B:D.469, B:N.719 Salt bridges: B:K.473, B:K.473, B:K.689, B:K.689, B:K.721, B:K.721, B:K.747, B:K.747, B:K.775, B:K.775, B:K.775 IHP.5: 10 residues within 4Å: Chain C: T.467, D.469, K.473, K.689, N.719, K.721, K.747, T.749, K.773, K.775 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:T.749, C:T.749 Salt bridges: C:K.473, C:K.473, C:K.689, C:K.721, C:K.747, C:K.747, C:K.773, C:K.775 IHP.7: 9 residues within 4Å: Chain D: T.467, K.473, H.640, K.689, N.719, K.721, K.747, K.773, K.775 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.719 Salt bridges: D:K.473, D:H.640, D:K.689, D:K.721, D:K.747, D:K.773, D:K.775, D:K.775

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 15 residues within 4Å: Chain A: V.155, V.156, F.158, G.186, L.187, G.188, K.189, T.190, T.191, L.312, L.320, P.350, V.354, M.462, H.478 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:V.156, A:V.156, A:G.186, A:L.187, A:G.188, A:K.189, A:T.190, A:T.191, A:T.191 Salt bridges: A:K.189, A:H.478, A:H.478 ADP.4: 13 residues within 4Å: Chain B: V.155, V.156, F.158, P.185, G.186, L.187, G.188, K.189, T.190, T.191, L.320, P.350, H.478 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:V.156, B:V.156, B:G.186, B:L.187, B:G.188, B:K.189, B:T.190, B:T.190, B:T.191, B:T.191 Salt bridges: B:K.189, B:H.478, B:H.478 ADP.6: 13 residues within 4Å: Chain C: V.155, V.156, F.158, G.186, L.187, G.188, T.191, L.312, L.320, K.324, P.350, V.354, M.462 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.156, C:G.186 Salt bridges: C:K.324, C:K.324 ADP.8: 16 residues within 4Å: Chain D: V.155, V.156, F.158, G.186, L.187, G.188, T.191, L.312, L.320, K.324, P.350, L.351, V.354, N.459, M.462, H.478 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:V.156, D:V.156, D:P.350 Salt bridges: D:K.324, D:K.324 pi-Stacking: D:F.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, S. et al., Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR. Nature (2024)

Release Date

2024-05-22

Peptides

NRC2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

D
G

NRC2

Related Entries With Identical Sequence