- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 35 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.8: 2 residues within 4Å:- Chain A: Y.18, N.51
Ligand excluded by PLIPNAG.9: 4 residues within 4Å:- Chain A: N.110, T.112, N.113, F.115
Ligand excluded by PLIPNAG.10: 2 residues within 4Å:- Chain A: N.151, N.152
Ligand excluded by PLIPNAG.11: 4 residues within 4Å:- Chain A: T.96, N.220, T.222
- Chain B: E.451
Ligand excluded by PLIPNAG.12: 2 residues within 4Å:- Chain A: N.268, T.270
Ligand excluded by PLIPNAG.13: 2 residues within 4Å:- Chain A: N.601, T.603
Ligand excluded by PLIPNAG.14: 1 residues within 4Å:- Chain A: N.642
Ligand excluded by PLIPNAG.15: 1 residues within 4Å:- Chain A: N.694
Ligand excluded by PLIPNAG.16: 4 residues within 4Å:- Chain A: A.691, E.1057, K.1058, N.1059
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain A: N.1083, H.1086, F.1088
Ligand excluded by PLIPNAG.18: 1 residues within 4Å:- Chain A: N.1119
Ligand excluded by PLIPNAG.19: 2 residues within 4Å:- Chain A: N.317, Q.565
Ligand excluded by PLIPNAG.20: 1 residues within 4Å:- Chain A: N.329
Ligand excluded by PLIPNAG.21: 4 residues within 4Å:- Chain A: R.332, F.333, A.334, N.340
Ligand excluded by PLIPNAG.22: 3 residues within 4Å:- Chain B: N.110, N.113, E.143
Ligand excluded by PLIPNAG.23: 2 residues within 4Å:- Chain B: N.152
- Ligands: NAG.42
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain B: N.220
- Chain C: E.451
Ligand excluded by PLIPNAG.25: 3 residues within 4Å:- Chain B: E.267, N.268
- Chain C: K.543
Ligand excluded by PLIPNAG.26: 2 residues within 4Å:- Chain B: N.601, T.603
Ligand excluded by PLIPNAG.27: 2 residues within 4Å:- Chain B: Y.640, N.642
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain A: Y.781
- Chain B: N.694
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain B: A.691, E.1057, N.1059
Ligand excluded by PLIPNAG.30: 3 residues within 4Å:- Chain B: N.1083, T.1085, H.1086
Ligand excluded by PLIPNAG.31: 1 residues within 4Å:- Chain B: N.1119
Ligand excluded by PLIPNAG.32: 4 residues within 4Å:- Chain B: V.327, T.331, F.333, N.340
Ligand excluded by PLIPNAG.33: 2 residues within 4Å:- Chain C: Y.18, N.51
Ligand excluded by PLIPNAG.34: 4 residues within 4Å:- Chain C: N.110, T.112, N.113, F.115
Ligand excluded by PLIPNAG.35: 4 residues within 4Å:- Chain A: K.543
- Chain C: N.266, E.267, N.268
Ligand excluded by PLIPNAG.36: 3 residues within 4Å:- Chain C: N.601, T.603, E.604
Ligand excluded by PLIPNAG.37: 2 residues within 4Å:- Chain C: Y.640, N.642
Ligand excluded by PLIPNAG.38: 2 residues within 4Å:- Chain B: I.779
- Chain C: N.694
Ligand excluded by PLIPNAG.39: 3 residues within 4Å:- Chain C: E.1057, K.1058, N.1059
Ligand excluded by PLIPNAG.40: 4 residues within 4Å:- Chain C: N.1083, T.1085, H.1086, F.1088
Ligand excluded by PLIPNAG.41: 1 residues within 4Å:- Chain C: N.1119
Ligand excluded by PLIPNAG.42: 2 residues within 4Å:- Chain C: N.340
- Ligands: NAG.23
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yajima, H. et al., Structural basis for receptor-binding domain mobility of the spike in SARS-CoV-2 BA.2.86 and JN.1. Nat Commun (2024)
- Release Date
- 2024-10-09
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 35 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yajima, H. et al., Structural basis for receptor-binding domain mobility of the spike in SARS-CoV-2 BA.2.86 and JN.1. Nat Commun (2024)
- Release Date
- 2024-10-09
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C