SMTL ID : 8xv0.1

Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-mer
Ligands
2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yajima, H. et al., Structural basis for receptor-binding domain mobility of the spike in SARS-CoV-2 BA.2.86 and JN.1. Nat Commun (2024)
Release Date
2024-10-09
Peptides
Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Processed angiotensin-converting enzyme 2

Spike glycoprotein

Related Entries With Identical Sequence

7xwa.1 | 7xwa.2 | 8if2.1 | 8iou.1 | 8iov.1 | 8jyn.1 | 8jyo.1 | 8jyp.1 | 8xlm.1 | 8xln.1 | 8xux.1 | 8xuy.1 | 8xuz.1 | 8xv1.1 | 8xvm.1 | 9iu1.1