SMTL ID : 8xxw.1

Fab M2-7 complexed with SARS-Cov2 RBD and human ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.356, H.360 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.356, A:H.360

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: S.402, D.525, S.527, N.528 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.402, A:S.402 NAG.3: 2 residues within 4Å: Chain A: K.8, N.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.8, A:N.72 NAG.4: 2 residues within 4Å: Chain B: F.3, N.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Mosaic RBD nanoparticle elicits immunodominant antibody responses across sarbecoviruses. Cell Rep (2024)

Release Date

2024-06-19

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B
M2-7-Heavy chain: C
M2-7-Light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
H

D
L

Processed angiotensin-converting enzyme 2

Spike protein S1

M2-7-Heavy chain

M2-7-Light chain