SMTL ID : 8xy5.1 (1 other biounit)

Open conformation of Burkholderia stagnalis lipase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.286, D.332, Q.336, L.337, V.340 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.286, A:D.332, A:Q.336, A:V.340, H2O.2, H2O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.52, Y.53, A.122, T.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.123, A:T.123 Salt bridges: A:R.52

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 3 residues within 4Å: Chain A: T.261, T.271, P.277 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.261, A:P.277 Hydrogen bonds: A:T.271 Water bridges: A:A.270, A:A.270, A:D.272 MPD.4: 3 residues within 4Å: Chain A: L.178, T.181, A.185 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.178, A:T.181, A:A.185 MPD.5: 4 residues within 4Å: Chain A: A.185, N.188, V.189, A.192 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.189 Hydrogen bonds: A:N.188 Water bridges: A:Q.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kataoka, S. et al., Structural and functional studies of lipase from Burkholderia stagnalis. To Be Published

Release Date

2025-01-22

Peptides

Alpha/beta hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase

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