SMTL ID : 8xye.1 (1 other biounit)

Crystal structure of SARS-CoV-2 BA.4 RBD and human ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.32 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: K.10, N.74, T.76 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 3 residues within 4Å: Chain A: Q.65, N.87, S.90 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.65

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.37, T.39, E.41, N.42, Q.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.39, A:N.42 NAG.4: 2 residues within 4Å: Chain A: N.306, M.307 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain A: N.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.416 NAG.6: 3 residues within 4Å: Chain A: S.404, S.529, N.530 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.404, A:S.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, J. et al., Crystal structure of SARS-CoV-2 BA.4 RBD and human ACE2. To Be Published

Release Date

2025-01-22

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Processed angiotensin-converting enzyme 2

Spike protein S1

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