SMTL ID : 8xz3.1

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ERY: ERYTHROMYCIN A(Non-functional Binders)

ERY.1: 8 residues within 4Å: Chain B: U.860, A.2281, A.2282, A.2285, A.2726, G.2728, C.2833, U.2834 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srinivasan, K. et al., Cryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria. Structure (2024)

Release Date

2024-07-31

Peptides

50S ribosomal protein bL37: A
Large ribosomal subunit protein uL2: D
Large ribosomal subunit protein uL3: E
Large ribosomal subunit protein uL4: F
Large ribosomal subunit protein uL5: G
Large ribosomal subunit protein uL6: H
50S ribosomal protein L9: I
Large ribosomal subunit protein uL10: J
Large ribosomal subunit protein uL11: K
Large ribosomal subunit protein uL13: L
50S ribosomal protein L14: M
Large ribosomal subunit protein uL15: N
Large ribosomal subunit protein uL16: O
Large ribosomal subunit protein bL17: P
Large ribosomal subunit protein uL18: Q
50S ribosomal protein L19: R
Large ribosomal subunit protein bL20: S
Large ribosomal subunit protein bL21: T
Large ribosomal subunit protein uL22: U
Large ribosomal subunit protein uL23: V
Large ribosomal subunit protein uL24: W
Large ribosomal subunit protein bL25: X
Large ribosomal subunit protein bL27: Y
Large ribosomal subunit protein bL28: Z
Large ribosomal subunit protein uL29: 0
Large ribosomal subunit protein uL30: 1
Large ribosomal subunit protein bL32: 2
Large ribosomal subunit protein bL33A: 3
Large ribosomal subunit protein bL34: 4
Large ribosomal subunit protein bL35: 5
50S ribosomal protein L36: 6
Large ribosomal subunit protein bL31: 7

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
3

D
C

E
D

F
E

G
F

H
G

I
H

J
I

K
J

L
K

M
L

N
M

O
N

P
O

Q
P

R
Q

S
R

T
S

U
T

V
U

W
V

X
W

Y
X

Z
Y

0
Z

1
a

2
b

3
c

4
d

5
e

6
f

7
g

50S ribosomal protein bL37

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

50S ribosomal protein L9

Large ribosomal subunit protein uL10

Large ribosomal subunit protein uL11

Large ribosomal subunit protein uL13

50S ribosomal protein L14

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

50S ribosomal protein L19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33A

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

50S ribosomal protein L36

Large ribosomal subunit protein bL31

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