SMTL ID : 8xz9.1

BA.2.86 Spike in complex with bovine ACE2 (bound 2 ACE2)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-3-mer

Ligands

12 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-BMA.1: 1 residues within 4Å: Chain C: N.1110 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.1110 NAG-BMA.2: 2 residues within 4Å: Chain D: I.1108, N.1110 No protein-ligand interaction detected (PLIP) NAG-BMA.3: 4 residues within 4Å: Chain D: K.771, N.777, S.779, Q.780 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.777, D:S.779 NAG-BMA.4: 4 residues within 4Å: Chain D: N.1074, T.1076, H.1077, F.1079 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:T.1076 Hydrogen bonds: D:T.1076, D:H.1077 NAG-BMA.5: 4 residues within 4Å: Chain D: N.693, L.898, Q.902, Q.1047 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.693, D:Q.902, D:Q.1047 NAG-BMA.7: 1 residues within 4Å: Chain B: N.1110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.1110 NAG-BMA.8: 3 residues within 4Å: Chain B: N.777, S.779, Q.780 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.777, B:S.779 NAG-BMA.9: 4 residues within 4Å: Chain B: N.693, L.898, Q.902, Q.1047 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.902, B:Q.1047 NAG-BMA.10: 4 residues within 4Å: Chain B: N.1074, T.1076, H.1077, F.1079 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.1076 NAG-BMA.11: 2 residues within 4Å: Chain D: E.317, N.331 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.317 NAG-BMA.12: 3 residues within 4Å: Chain C: K.534 Chain D: N.257, N.259 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.257, D:N.259 NAG-BMA.13: 4 residues within 4Å: Chain C: N.1074, T.1076, H.1077, F.1079 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:T.1076 Hydrogen bonds: C:T.1076, C:H.1077

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.6: 8 residues within 4Å: Chain B: T.86, N.211, I.212, T.213 Chain D: R.434, S.436, K.439, D.444 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:K.439 Hydrogen bonds: D:R.434, D:R.434, D:S.436, D:S.436, D:E.442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, C. et al., BA.2.86 Spike in complex with bovine ACE2. To Be Published

Release Date

2024-11-13

Peptides

Processed angiotensin-converting enzyme 2: AE
Spike glycoprotein: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

C
C

D
D

Processed angiotensin-converting enzyme 2

Spike glycoprotein