SMTL ID : 8xza.1

BA.2.86 Spike in complex with bovine ACE2 (Local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.353, R.354, R.465 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.353, A:R.354, A:R.465, A:R.465 NAG.2: 3 residues within 4Å: Chain A: H.338, N.342, F.370 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.370 Hydrogen bonds: A:N.342 NAG.5: 3 residues within 4Å: Chain B: N.49, N.53, T.55 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.49 NAG.6: 2 residues within 4Å: Chain B: N.90, T.92 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.92 NAG.7: 3 residues within 4Å: Chain B: E.294, E.297, N.298 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.297, B:N.298 NAG.8: 1 residues within 4Å: Chain B: N.431 No protein-ligand interaction detected (PLIP) NAG.9: 4 residues within 4Å: Chain B: H.415, A.419, S.544, N.545 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.544, B:S.544

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: P.345, H.373, E.374, H.377 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: R.168, W.477, K.480 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, C. et al., BA.2.86 Spike in complex with bovine ACE2. To Be Published

Release Date

2024-11-13

Peptides

Spike glycoprotein: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Spike glycoprotein

Angiotensin-converting enzyme

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