SMTL ID : 8y16.1

Cryo-EM structure of SARS-CoV-2 Omicron JN.1 spike protein in complex with human ACE2

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-mer
Ligands
6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
13 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x ZN: ZINC ION(Non-covalent)
37 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Li, L. et al., Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants. Structure (2024)
Release Date
2024-07-03
Peptides
Angiotensin-converting enzyme 2: AEF
Spike glycoprotein: BCD
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
E
E
F
F
B
B
C
C
D
D

Angiotensin-converting enzyme 2

Toggle Identical (AEF)

Spike glycoprotein

Related Entries With Identical Sequence

3sci.1 | 3sci.2 | 3scj.1 | 3scj.2 | 6acg.1 | 6acj.1 | 6ack.1 | 6m0j.1 | 7ekc.1 | 7eke.1 | 7ekf.1 | 7ekg.1 | 7ekh.1 | 7yr2.1 | 7yr3.1 | 7yr4.1 | 8qsq.1 | 8wlz.1 | 8xn2.1 | 8xn3.1 | 8xn5.1 | 8xnf.1 | 8xnk.1 | 8y18.1 | 8y5j.1 | 8y6a.1