SMTL ID : 8y22.1 (1 other biounit)

FGFR1 kinase domain with a covalent inhibitor 9g

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-[4-[[4-azanyl-3-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrazolo[3,4-d]pyrimidin-1-yl]methyl]phenyl]propanamide

01.1: 20 residues within 4Å: Chain A: L.27, E.29, C.31, V.35, A.55, K.57, E.74, M.78, I.88, V.104, E.105, Y.106, A.107, L.173, A.183, D.184, F.185, T.201 Ligands: SO4.4, SO4.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.35, A:I.88, A:I.88, A:F.185, A:T.201 Hydrogen bonds: A:C.31, A:E.105, A:A.107

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.113, R.170, T.200, N.202, R.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.200, A:N.202 Salt bridges: A:R.113, A:R.170, A:R.204 SO4.3: 2 residues within 4Å: Chain A: G.82, K.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.83 SO4.4: 8 residues within 4Å: Chain A: C.31, F.32, G.33, V.35, K.57, D.184 Ligands: 01.1, SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.31, A:F.32 Salt bridges: A:K.57 SO4.5: 3 residues within 4Å: Chain A: D.184 Ligands: 01.1, SO4.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, W. et al., Design, synthesis and biological evaluation of 5-amino-1H-pyrazole-4-carboxamide derivatives as pan-FGFR covalent inhibitors. Eur.J.Med.Chem. (2024)

Release Date

2024-06-26

Peptides

Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibroblast growth factor receptor 1

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