SMTL ID : 8y2d.1

Cryo-EM structure of human dopamine transporter in complex with dopamine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x LDP: L-DOPAMINE(Non-covalent)

LDP.1: 10 residues within 4Å: Chain A: D.12, S.82, V.85, G.86, Y.89, F.253, F.259, S.355, A.356, G.359 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.85, A:Y.89 Hydrogen bonds: A:D.12, A:S.82 Water bridges: A:A.356, A:M.360 pi-Stacking: A:F.259

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: A.10, V.11, D.12, N.15, S.254, N.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.10, A:D.12, A:N.15 NA.3: 6 residues within 4Å: Chain A: G.8, V.11, D.12, L.351, D.354, S.355 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.11, A:S.355

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: F.19, Y.35, Q.250, S.254, N.286, S.290 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Dopamine reuptake and inhibitory mechanisms in human dopamine transporter. Nature (2024)

Release Date

2024-08-14

Peptides

Sodium-dependent dopamine transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent dopamine transporter