- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
6PL.1: 8 residues within 4Å:- Chain A: A.115, F.135, Y.139, S.186, F.218, G.226, Q.227, F.230
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.115, A:F.135, A:Y.139, A:Y.139, A:F.218, A:F.230
6PL.2: 15 residues within 4Å:- Chain A: L.262, S.265, S.266, F.269, F.271, M.274, G.275, I.278, L.341, F.343, Y.348, S.353, V.357, I.361
- Ligands: 6PL.3
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:L.262, A:F.269, A:F.269, A:F.269, A:F.271, A:I.278, A:L.341, A:F.343, A:Y.348, A:V.357, A:I.361
6PL.3: 13 residues within 4Å:- Chain B: V.37, Y.39, F.40, G.43, T.44, N.47, W.50, F.51, K.86, R.90
- Chain D: Y.39
- Ligands: 6PL.2, 6PL.7
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.37, B:Y.39, B:F.40, B:F.51
- Hydrogen bonds: B:N.47
- Salt bridges: B:K.86, B:R.90
6PL.4: 9 residues within 4Å:- Chain A: K.128, G.129, L.260, L.261, W.264
- Chain B: S.30, I.34, E.38, K.41
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.260, A:L.261
6PL.5: 8 residues within 4Å:- Chain C: A.115, F.135, Y.139, S.186, F.218, G.226, Q.227, F.230
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.115, C:F.135, C:Y.139, C:Y.139, C:F.218, C:F.230
6PL.6: 15 residues within 4Å:- Chain C: L.262, S.265, S.266, F.269, F.271, M.274, G.275, I.278, L.341, F.343, Y.348, S.353, V.357, I.361
- Ligands: 6PL.7
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:L.262, C:F.269, C:F.269, C:F.269, C:F.271, C:I.278, C:L.341, C:F.343, C:Y.348, C:V.357, C:I.361
6PL.7: 13 residues within 4Å:- Chain B: Y.39
- Chain D: V.37, Y.39, F.40, G.43, T.44, N.47, W.50, F.51, K.86, R.90
- Ligands: 6PL.3, 6PL.6
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:V.37, D:Y.39, D:F.40, D:F.51
- Hydrogen bonds: D:N.47
- Salt bridges: D:K.86, D:R.90
6PL.8: 9 residues within 4Å:- Chain C: K.128, G.129, L.260, L.261, W.264
- Chain D: S.30, I.34, E.38, K.41
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.260, C:L.261
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Mechanism of ceramide synthase inhibition by fumonisin B 1. Structure (2024)
- Release Date
- 2024-11-27
- Peptides
- Ceramide synthase LAC1: AC
Ceramide synthase subunit LIP1: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Z. et al., Mechanism of ceramide synthase inhibition by fumonisin B 1. Structure (2024)
- Release Date
- 2024-11-27
- Peptides
- Ceramide synthase LAC1: AC
Ceramide synthase subunit LIP1: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D - Membrane
-
We predict this structure to be a membrane protein.