SMTL ID : 8y32.1

BA.2.86-V483 RBD in complex with bACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: A.245, W.459, V.468 Ligand excluded by PLIP

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 5 residues within 4Å: Chain A: N.35, E.39, N.40, D.319, R.321 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.39, A:N.40, A:R.321 NAG.3: 3 residues within 4Å: Chain A: K.8, N.72, T.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.8, A:N.72 NAG.4: 2 residues within 4Å: Chain A: E.276, N.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.280, A:N.280 NAG.5: 4 residues within 4Å: Chain A: F.266, N.413, E.414, I.417 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.417 Hydrogen bonds: A:E.414, A:E.414 NAG.6: 5 residues within 4Å: Chain A: H.397, Y.398, A.401, S.526, N.527 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.401 Hydrogen bonds: A:S.526 NAG.7: 3 residues within 4Å: Chain B: H.9, N.13, F.41 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.41 Hydrogen bonds: B:N.13 NAG.8: 2 residues within 4Å: Chain B: R.16, N.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, C. et al., BA.2.86-V483 RBD in complex with bACE2. To Be Published

Release Date

2024-11-13

Peptides

Angiotensin-converting enzyme: A
Spike protein S1 RBD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme

Spike protein S1 RBD