SMTL ID : 8y33.1

A near-infrared fluorescent protein of de novo backbone design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x V8U: 3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid(Covalent)

V8U.1: 21 residues within 4Å: Chain A: F.17, A.21, S.24, M.25, I.87, R.92, D.93, L.96, C.97, R.99, D.100, W.103, F.104, I.123, C.127, E.130, M.131, S.134, L.135, M.141, S.144 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.17, A:F.17, A:I.87, A:L.96, A:L.96, A:W.103, A:W.103, A:F.104, A:I.123, A:E.130, A:L.135 Hydrogen bonds: A:S.24, A:R.99, A:D.100, A:D.100, A:D.100, A:S.134, A:S.134 Salt bridges: A:R.92, A:R.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X. et al., Using Protein Design and Directed Evolution to Monomerize a Bright Near-Infrared Fluorescent Protein. Acs Synth Biol (2024)

Release Date

2024-02-28

Peptides

near-infrared fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

near-infrared fluorescent protein