SMTL ID : 8y41.1

VcFadRqm, mutant protein of Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

2 x 3VV: S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)(Non-covalent)

3VV.1: 24 residues within 4Å: Chain A: L.101, L.102, A.103, A.104, R.105, T.106, I.108, D.185, I.204, F.208, L.211, Y.212, G.216, Y.219, R.253, G.256, S.259, G.260, W.263 Chain B: R.114, Y.115, K.118, I.204, R.245 23 PLIP interactions: 16 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.101, A:L.101, A:A.104, A:I.108, A:I.204, A:F.208, A:L.211, A:L.211, A:Y.212, A:Y.212, A:Y.212, A:Y.212, B:I.204 Hydrogen bonds: A:R.105, A:R.105, A:S.259, B:R.114, B:R.245, B:R.245 Salt bridges: A:R.253, B:R.114, B:K.118, B:R.245 3VV.4: 31 residues within 4Å: Chain A: I.111, R.114, Y.115, K.118, L.119, R.245 Chain B: L.101, L.102, A.103, A.104, R.105, T.106, N.107, I.108, N.182, D.185, I.204, F.205, F.208, L.211, Y.212, G.216, Y.219, F.220, P.249, R.253, G.256, I.257, S.259, G.260, W.263 23 PLIP interactions: 18 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.101, B:L.102, B:A.104, B:I.108, B:I.204, B:F.205, B:Y.212, B:Y.212, B:Y.212, B:Y.212, B:Y.219, B:F.220, B:I.257 Hydrogen bonds: B:R.105, B:T.106, B:P.249, B:S.259, A:R.114, A:Y.115, A:L.119, A:R.245 Salt bridges: B:R.253 pi-Cation interactions: A:R.245

4 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: E.122, E.125 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.122, A:E.122, A:E.125 CD.3: 2 residues within 4Å: Chain A: S.123, H.195 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.195 CD.5: 1 residues within 4Å: Chain B: E.125 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.125 CD.6: 1 residues within 4Å: Chain B: H.195 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsui, W. et al., VcFadRqm, mutant protein of Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA. To Be Published

Release Date

2025-02-05

Peptides

Fatty acid metabolism regulator protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Fatty acid metabolism regulator protein

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