- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-2-2-mer
- Ligands
- 9 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.4: 1 residues within 4Å:- Chain A: N.1130
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 2 residues within 4Å:- Chain B: N.1094, H.1097
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 1 residues within 4Å:- Chain B: N.1130
No protein-ligand interaction detected (PLIP)NAG-NAG.14: 1 residues within 4Å:- Chain C: N.1130
No protein-ligand interaction detected (PLIP)- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(8-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 39 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.15: 4 residues within 4Å:- Chain A: N.612
- Chain C: K.831, Y.833, G.834
Ligand excluded by PLIPNAG.16: 1 residues within 4Å:- Chain A: N.653
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain A: S.704, N.705
- Chain C: Y.792
Ligand excluded by PLIPNAG.18: 2 residues within 4Å:- Chain A: E.1068, N.1070
Ligand excluded by PLIPNAG.19: 1 residues within 4Å:- Chain A: N.599
Ligand excluded by PLIPNAG.20: 2 residues within 4Å:- Chain A: S.61, N.62
Ligand excluded by PLIPNAG.21: 4 residues within 4Å:- Chain A: N.121, T.123, N.124, F.126
Ligand excluded by PLIPNAG.22: 5 residues within 4Å:- Chain A: I.230, N.231
- Chain B: F.461, E.462, R.463
Ligand excluded by PLIPNAG.23: 2 residues within 4Å:- Chain A: N.242, R.243
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain A: N.277, N.279
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain A: N.328, V.329
Ligand excluded by PLIPNAG.26: 3 residues within 4Å:- Chain A: H.336, N.340, F.368
Ligand excluded by PLIPNAG.27: 4 residues within 4Å:- Chain A: E.337, R.343, N.351, T.353
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain B: N.612, T.614
Ligand excluded by PLIPNAG.29: 2 residues within 4Å:- Chain B: Y.651, N.653
Ligand excluded by PLIPNAG.30: 4 residues within 4Å:- Chain A: I.790
- Chain B: Y.703, S.704, N.705
Ligand excluded by PLIPNAG.31: 2 residues within 4Å:- Chain B: E.1068, N.1070
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain B: N.340, T.342, F.368
Ligand excluded by PLIPNAG.33: 2 residues within 4Å:- Chain B: N.328, Q.576
Ligand excluded by PLIPNAG.34: 2 residues within 4Å:- Chain B: F.60, N.62
Ligand excluded by PLIPNAG.35: 2 residues within 4Å:- Chain B: N.121, T.123
Ligand excluded by PLIPNAG.36: 2 residues within 4Å:- Chain B: Q.114, N.163
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain B: G.229, I.230, N.231
Ligand excluded by PLIPNAG.38: 2 residues within 4Å:- Chain B: N.242, R.243
Ligand excluded by PLIPNAG.39: 2 residues within 4Å:- Chain B: N.599, T.600
Ligand excluded by PLIPNAG.40: 3 residues within 4Å:- Chain C: P.327, N.328, Q.576
Ligand excluded by PLIPNAG.41: 3 residues within 4Å:- Chain B: Y.833
- Chain C: N.612, T.614
Ligand excluded by PLIPNAG.42: 1 residues within 4Å:- Chain C: N.653
Ligand excluded by PLIPNAG.43: 3 residues within 4Å:- Chain B: Y.792
- Chain C: S.704, N.705
Ligand excluded by PLIPNAG.44: 3 residues within 4Å:- Chain C: A.702, E.1068, N.1070
Ligand excluded by PLIPNAG.45: 4 residues within 4Å:- Chain C: R.343, A.345, N.351, T.353
Ligand excluded by PLIPNAG.46: 4 residues within 4Å:- Chain C: H.336, F.339, N.340, F.368
Ligand excluded by PLIPNAG.47: 1 residues within 4Å:- Chain C: N.599
Ligand excluded by PLIPNAG.48: 1 residues within 4Å:- Chain C: N.62
Ligand excluded by PLIPNAG.49: 4 residues within 4Å:- Chain C: N.121, T.123, N.124, F.126
Ligand excluded by PLIPNAG.50: 2 residues within 4Å:- Chain C: Q.114, N.163
Ligand excluded by PLIPNAG.51: 2 residues within 4Å:- Chain C: I.230, N.231
Ligand excluded by PLIPNAG.52: 2 residues within 4Å:- Chain C: N.242, R.243
Ligand excluded by PLIPNAG.53: 3 residues within 4Å:- Chain A: K.554
- Chain C: N.277, N.279
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, Q. et al., Enhancing RBD exposure and S1 shedding by an extremely conserved SARS-CoV-2 NTD epitope. Signal Transduct Target Ther (2024)
- Release Date
- 2024-09-11
- Peptides
- Spike glycoprotein: ABC
XG2v046 Heavy chain: DF
XG2v046 Light chain: EG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
AD
HF
DE
LG
E
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-2-2-mer
- Ligands
- 9 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(8-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 39 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, Q. et al., Enhancing RBD exposure and S1 shedding by an extremely conserved SARS-CoV-2 NTD epitope. Signal Transduct Target Ther (2024)
- Release Date
- 2024-09-11
- Peptides
- Spike glycoprotein: ABC
XG2v046 Heavy chain: DF
XG2v046 Light chain: EG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
AD
HF
DE
LG
E