SMTL ID : 8y4d.1

Crystal structure of SARS-Cov-2 main protease in complex with Bofutrelvir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x FHR: ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide(Non-covalent)(Covalent)

FHR.1: 16 residues within 4Å: Chain A: H.39, M.47, Y.52, F.138, L.139, A.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, H.170, D.185, R.186 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.39 Hydrogen bonds: A:F.138, A:S.142, A:C.143, A:H.162, A:H.162, A:E.164, A:E.164 pi-Stacking: A:H.39 FHR.2: 17 residues within 4Å: Chain B: H.39, M.47, F.138, L.139, A.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, P.166, H.170, D.185, R.186, Q.187 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:H.39 Hydrogen bonds: B:F.138, B:S.142, B:C.143, B:H.162, B:E.164, B:E.164 pi-Stacking: B:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X.L. et al., Crystal structure of SARS-Cov-2 main protease in complex with Bofutrelvir. To Be Published

Release Date

2025-01-08

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5