SMTL ID : 8y4e.1

Crystal structure of SARS main protease in complex with Bofutrelvir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

2 x FHR: ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide(Covalent)

FHR.1: 17 residues within 4Å: Chain A: H.40, M.48, Y.53, F.139, L.140, N.141, G.142, S.143, C.144, H.162, H.163, M.164, E.165, H.171, D.186, R.187, Q.188 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.40, A:M.48, A:D.186 Hydrogen bonds: A:G.142, A:S.143, A:C.144, A:H.163, A:H.163, A:E.165, A:E.165, A:E.165, A:E.165 pi-Stacking: A:H.40 FHR.2: 17 residues within 4Å: Chain B: H.40, M.48, Y.53, F.139, L.140, N.141, G.142, S.143, C.144, H.162, H.163, M.164, E.165, H.171, D.186, R.187, Q.188 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:H.40, B:M.48, B:D.186, B:Q.188 Hydrogen bonds: B:G.142, B:S.143, B:S.143, B:C.144, B:H.163, B:E.165, B:E.165, B:E.165, B:E.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, C. et al., Crystal structure of SARS main protease in complex with Bofutrelvir. To Be Published

Release Date

2025-01-08

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5

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