SMTL ID : 8y58.1

Crystal structure of TRIM21 PRYSPRY (D355A) in complex with acepromazine.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PMZ: 1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE(Non-covalent)

PMZ.1: 15 residues within 4Å: Chain A: Y.45, M.47, A.70, W.71, A.72, F.86, L.87, L.88, W.98, L.99, W.100, Q.112, S.164, G.166, F.167 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.45, A:A.72, A:W.98, A:W.98 Hydrogen bonds: A:L.88 pi-Cation interactions: A:W.100

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: R.81, F.86, L.87, S.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.81, A:L.87, A:S.92 FMT.3: 1 residues within 4Å: Chain A: Y.60 No protein-ligand interaction detected (PLIP) FMT.4: 2 residues within 4Å: Chain A: K.91, Y.110 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, P. et al., Selective degradation of multimeric proteins by TRIM21-based molecular glue and PROTAC degraders. Cell (2024)

Release Date

2024-10-09

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM21

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