SMTL ID : 8y7u.1

Crystal structure of SARS-CoV-2 main protease in complex with C5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 01: 2-(3-fluoro-4-(trifluoromethyl)phenyl)-6-(iminomethyl)-4-(2-oxo-2-(pyridin-2-yl)ethyl)-1,2,4-triazine-3,5(2H,4H)-dione

01.1: 13 residues within 4Å: Chain A: L.27, H.41, M.49, Y.54, N.142, G.143, S.144, C.145, H.164, M.165, D.187, R.188, Q.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.143, A:G.143, A:C.145 pi-Stacking: A:H.41 01.2: 13 residues within 4Å: Chain B: L.27, H.41, M.49, Y.54, N.142, G.143, S.144, C.145, H.164, M.165, D.187, R.188, Q.189 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.143, B:G.143, B:C.145 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, R. et al., Crystal structure of SARS-CoV-2 main protease in complex with C5. To Be Published

Release Date

2025-02-05

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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