SMTL ID : 8y83.1 (1 other biounit)

Crystal structure of a ketoreductase from Sphingobacterium siyangense SY1 with co-enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: G.13, G.15, S.16, G.17, I.18, D.37, I.38, A.62, D.63, S.64, N.90, A.91, G.92, I.114, M.141, A.142, S.143, Y.156, K.160, P.186, G.187, Y.188, I.189, T.191, L.193 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.186 Hydrogen bonds: A:G.13, A:G.15, A:S.16, A:I.18, A:I.38, A:D.63, A:S.64, A:N.90, A:K.160, A:I.189, A:I.189, A:T.191 Water bridges: A:G.19, A:N.90 NAD.2: 25 residues within 4Å: Chain B: G.13, G.15, S.16, G.17, I.18, D.37, I.38, A.62, D.63, S.64, N.90, A.91, G.92, I.93, I.114, M.141, A.142, S.143, Y.156, K.160, P.186, G.187, Y.188, I.189, T.191 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.186 Hydrogen bonds: B:G.15, B:S.16, B:S.16, B:S.16, B:I.18, B:I.38, B:D.63, B:D.63, B:S.64, B:N.90, B:Y.156, B:K.160, B:I.189, B:I.189, B:T.191 Water bridges: B:G.19, B:N.90 NAD.3: 25 residues within 4Å: Chain C: G.13, G.15, S.16, G.17, I.18, D.37, I.38, A.62, D.63, S.64, N.90, A.91, G.92, I.114, M.141, A.142, S.143, Y.156, K.160, P.186, G.187, Y.188, I.189, T.191, L.193 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:P.186 Hydrogen bonds: C:G.13, C:G.15, C:S.16, C:I.18, C:I.38, C:D.63, C:D.63, C:S.64, C:N.90, C:Y.156, C:K.160, C:I.189, C:I.189 Water bridges: C:G.19, C:N.90 NAD.4: 25 residues within 4Å: Chain D: G.13, G.15, S.16, G.17, I.18, D.37, I.38, A.62, D.63, S.64, N.90, A.91, G.92, I.93, I.114, M.141, A.142, S.143, Y.156, K.160, P.186, G.187, Y.188, I.189, T.191 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.186 Hydrogen bonds: D:G.15, D:S.16, D:S.16, D:S.16, D:I.18, D:I.38, D:D.63, D:S.64, D:N.90, D:K.160, D:I.189, D:I.189 Water bridges: D:G.19, D:N.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Che, C. et al., Structure-based reshaping of a new ketoreductase from Sphingobacterium siyangense SY1 toward alpha-haloacetophenones. Int.J.Biol.Macromol. (2024)

Release Date

2024-06-12

Peptides

NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family)

Related Entries With Identical Sequence