SMTL ID : 8yez.1

Human PIEZO1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x L9Q: (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)

L9Q.1: 9 residues within 4Å: Chain A: F.2104, Q.2107, G.2108, L.2111, V.2450, F.2454, F.2458 Chain B: K.2453, R.2456 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.2104, A:V.2450, A:F.2454, A:F.2454, A:F.2454 Hydrogen bonds: A:L.2111 L9Q.2: 20 residues within 4Å: Chain A: D.1959, Y.1961, A.1962, F.1965, L.1966, V.1969, F.1972, F.2012, M.2015, R.2019, Y.2022, I.2089, G.2091, N.2092, F.2093, L.2094, F.2109, L.2115, R.2119, M.2122 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.1965, A:F.1965, A:L.1966, A:V.1969, A:F.1972, A:F.2012, A:F.2109, A:L.2115, A:L.2115, A:R.2119 Hydrogen bonds: A:F.2093 Salt bridges: A:R.2019, A:R.2019, A:R.2119, A:R.2119 L9Q.3: 9 residues within 4Å: Chain A: K.2453, R.2456 Chain C: F.2104, Q.2107, G.2108, L.2111, V.2450, F.2454, F.2458 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:F.2104, C:V.2450, C:F.2454, C:F.2454, C:F.2454, A:K.2453, A:K.2453 Hydrogen bonds: C:L.2111 Salt bridges: A:K.2453, A:K.2453 L9Q.4: 9 residues within 4Å: Chain B: F.2104, Q.2107, G.2108, L.2111, V.2450, F.2454, F.2458 Chain C: K.2453, R.2456 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.2104, B:V.2450, B:F.2454, B:F.2454, B:F.2454 Hydrogen bonds: B:L.2111 L9Q.5: 20 residues within 4Å: Chain B: D.1959, Y.1961, A.1962, F.1965, L.1966, V.1969, F.1972, F.2012, M.2015, R.2019, Y.2022, I.2089, G.2091, N.2092, F.2093, L.2094, F.2109, L.2115, R.2119, M.2122 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.1965, B:F.1965, B:L.1966, B:V.1969, B:F.1972, B:F.2012, B:F.2093, B:F.2109, B:L.2115, B:L.2115, B:R.2119 Hydrogen bonds: B:F.2093 Salt bridges: B:R.2019, B:R.2019, B:R.2119, B:R.2119 L9Q.6: 20 residues within 4Å: Chain C: D.1959, Y.1961, A.1962, F.1965, L.1966, V.1969, F.1972, F.2012, M.2015, R.2019, Y.2022, I.2089, G.2091, N.2092, F.2093, L.2094, F.2109, L.2115, R.2119, M.2122 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.1965, C:F.1965, C:L.1966, C:V.1969, C:F.1972, C:F.2012, C:F.2109, C:L.2115, C:L.2115, C:R.2119 Hydrogen bonds: C:F.2093 Salt bridges: C:R.2019, C:R.2019, C:R.2119, C:R.2119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, Y. et al., Structure of human PIEZO1 and its slow inactivating channelopathy mutants. Elife (2024)

Release Date

2025-01-22

Peptides

Piezo-type mechanosensitive ion channel component 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Piezo-type mechanosensitive ion channel component 1

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