SMTL ID : 8ygy.1

Structure of the KLK1 from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- FUC: alpha-L-fucopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-FUC.1: 5 residues within 4Å: Chain A: N.78, S.80, H.85, Q.88, E.91 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.85 Hydrogen bonds: A:Q.88, A:E.91

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.33, T.108, V.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.108, A:T.108 Water bridges: A:R.33 Salt bridges: A:R.33

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.19, Q.48, W.50 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.19, A:L.56 EDO.4: 5 residues within 4Å: Chain A: W.5, C.7, E.8, S.11, Q.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.5, A:E.8, A:S.11 EDO.5: 3 residues within 4Å: Chain A: V.31, H.32, E.231 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of the KLK1 from Biortus. To Be Published

Release Date

2024-03-13

Peptides

Kallikrein-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kallikrein-1

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