SMTL ID : 8ygz.1

The Crystal Structure of TGF beta R2 kinase domain from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.23, K.42, L.70, L.151, C.161 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.42, A:E.55 EDO.2: 3 residues within 4Å: Chain A: E.100, T.103, R.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.104 Water bridges: A:E.100 EDO.3: 1 residues within 4Å: Chain A: E.231 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: N.271, Q.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.273, A:Q.273 EDO.5: 5 residues within 4Å: Chain A: A.124, H.125, S.128, Q.297 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.124, A:H.125 Water bridges: A:Q.297 EDO.6: 4 residues within 4Å: Chain A: L.6, E.77, R.78, K.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.79 EDO.7: 3 residues within 4Å: Chain A: H.66, R.121 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.66 Water bridges: A:Q.297 EDO.9: 6 residues within 4Å: Chain A: F.239, G.240, S.241, K.242, P.263, E.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.239, A:S.241, A:E.264 Water bridges: A:G.240 EDO.10: 6 residues within 4Å: Chain A: K.17, G.18, R.19, F.20, A.21, E.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.18, A:G.18 Water bridges: A:E.22 EDO.11: 6 residues within 4Å: Chain A: A.40, A.91, F.92, H.93, L.151 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.93, A:H.93

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 9 residues within 4Å: Chain A: Q.99, K.146, S.148, T.186, R.188, Y.189, E.245, H.246, P.247 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.99, A:S.148, A:R.188, A:H.246 Water bridges: A:K.146, A:S.148, A:Y.189, A:P.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of TGF beta R2 kinase domain from Biortus. To Be Published

Release Date

2024-03-13

Peptides

TGF-beta receptor type-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TGF-beta receptor type-2