SMTL ID : 8yhw.4 (3 other biounits)

The Crystal Structure of NF-kB-inducing Kinase (NIK) from Biortus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 25 residues within 4Å: Chain A: L.78, G.79, R.80, G.81, S.82, F.83, G.84, V.86, A.99, K.101, M.141, E.142, L.143, L.144, S.148, Q.151, D.187, D.191, N.192, L.194, D.206, G.208, H.209 Ligands: MG.2, EDO.5 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.81, A:S.82, A:F.83, A:G.84, A:K.101, A:E.142, A:L.144, A:S.148, A:D.206 Water bridges: A:S.148, A:S.148, A:N.192, A:N.192, A:N.192 Salt bridges: A:K.101, A:K.101

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.192, D.206 Ligands: AGS.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.206, H2O.1, H2O.1

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.3: 5 residues within 4Å: Chain A: T.55, K.57, T.94, F.96, Y.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.55, A:K.57

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: S.82, K.189, D.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.189 Water bridges: A:N.192 EDO.5: 7 residues within 4Å: Chain A: E.112, V.125, M.141, C.205, D.206, F.207 Ligands: AGS.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.112, A:E.112, A:D.206, A:F.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Crystal Structure of NF-kB-inducing Kinase (NIK) from Biortus. To Be Published

Release Date

2024-03-13

Peptides

Mitogen-activated protein kinase kinase kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Mitogen-activated protein kinase kinase kinase 14

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