SMTL ID : 8yim.1

Crystal Structure of Human Rab23 in complex with GMPPNP (1.35 Angstroms Resolution)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 26 residues within 4Å: Chain A: N.12, G.13, A.14, V.15, G.16, K.17, S.18, S.19, F.29, T.30, K.31, D.32, Y.33, K.34, K.35, T.36, A.61, G.62, N.116, K.117, D.119, L.120, S.146, V.147, K.148 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:A.14, A:V.15, A:G.16, A:K.17, A:K.17, A:S.18, A:S.19, A:S.19, A:T.30, A:Y.33, A:K.34, A:T.36, A:G.62, A:N.116, A:K.117, A:K.117, A:V.147, A:K.148 Water bridges: A:S.18, A:Y.33, A:T.36, A:Q.63 Salt bridges: A:D.119 pi-Stacking: A:F.29, A:F.29

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.18, T.36 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.18, A:T.36, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chau, Y.Y. et al., Structural basis for Rab23 activation and a loss-of-function mutation in Carpenter Syndrome. J.Biol.Chem. (2024)

Release Date

2024-12-04

Peptides

Ras-related protein Rab-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-23

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