SMTL ID : 8yja.1

Structure of Vibrio vulnificus MARTX cysteine protease domain lacking beta-flap

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: H.57, R.87 Ligands: IHP.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.57, A:R.87, A:R.87

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 16 residues within 4Å: Chain A: E.29, S.30, R.31, R.87, H.136, S.138, S.171, R.173 Chain B: R.31, F.32, R.87, H.136, S.138, S.171, R.173 Ligands: NA.1 30 PLIP interactions: 15 interactions with chain B, 15 interactions with chain A Hydrogen bonds: B:S.138, B:S.171, B:S.171, A:S.30, A:R.31, A:H.136, A:S.138, A:S.138, A:S.171 Water bridges: B:R.87, B:R.87, B:Q.89, B:R.173, A:Q.89, A:R.173 Salt bridges: B:R.31, B:R.31, B:R.87, B:R.87, B:H.136, B:H.136, B:R.173, B:R.173, A:R.31, A:R.87, A:R.87, A:R.87, A:H.136, A:R.173, A:R.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Structural basis of the activation of MARTX cysteine protease domain from Vibrio vulnificus. Plos One (2024)

Release Date

2024-07-10

Peptides

MARTX cysteine protease domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MARTX cysteine protease domain