SMTL ID : 8yjc.1

Structure of Vibrio vulnificus MARTX cysteine protease domain C3727A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: E.43 Ligands: IHP.2 No protein-ligand interaction detected (PLIP)

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 17 residues within 4Å: Chain A: E.43, S.44, R.45, F.46, K.70, H.71, R.101, Q.103, S.152, S.185, R.187, G.197, R.198, K.199, K.211, K.216 Ligands: NA.1 37 PLIP interactions: 37 interactions with chain A Hydrogen bonds: A:Q.103, A:S.152, A:S.185, A:K.199 Water bridges: A:E.43, A:R.45, A:R.45, A:K.70, A:K.70, A:R.101, A:R.187, A:G.197, A:R.198, A:K.199, A:K.216, A:K.216, A:K.216 Salt bridges: A:R.45, A:K.70, A:K.70, A:K.70, A:H.71, A:R.101, A:R.101, A:R.101, A:R.187, A:R.187, A:R.198, A:R.198, A:K.199, A:K.199, A:K.199, A:K.211, A:K.211, A:K.216, A:K.216, A:K.216

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: A.17, G.18, G.19, E.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.18, A:E.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Structural basis of the activation of MARTX cysteine protease domain from Vibrio vulnificus. Plos One (2024)

Release Date

2024-07-10

Peptides

Multifunctional autoprocessing repeat-in-toxin (MARTX): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Multifunctional autoprocessing repeat-in-toxin (MARTX)